Data processing

WORKING WITH RECORDED IMAGES

LOADING INDIVIDUAL FILES

The Flamingo saves recorded image data as raw files, a fast and efficient format. Each stack is saved as a single file. Individual raw files can be imported into Fiji via File > Import > Raw… or by drag-and-drop. Adjust the following settings during import:

  • Image type: 16-bit Unsigned
  • Width & Height: 2048 (unless cropped)
  • Number of images: ≥ number of planes
  • Little-endian byte order

CONVERTING A LARGE NUMBER OF FILES

A Fiji macro for converting a given experiment folder can be downloaded here.

Description is coming soon.